TRANSCRIPTIONAL MECHANISMS REGULATING ACTIVITY-DEPENDENT GENE EXPRESSION
     

Andres Buonanno, Ph.D., Principal Investigator
Irina Karavanova, Ph.D., Staff Scientist
Yun Liu, M.D., Ph.D., Research Fellow
Marines Longart, Ph.D., Postdoctoral Fellow
Dorothy Turetsky, Ph.D., Postdoctoral Fellow
Detlef Vullhorst, Ph.D., Postdoctoral Fellow
Rolando Garcia, Ph.D., Visiting Scientist
Anand Desai, Predoctoral Fellow, University of Maryland
Steve Kinsey, Research Assistant
Kuzhalani Vasudevan, Research Assistant
Soledad Calvo, M.D., Ph.D., Guest Researcher

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Andres Buonanno
 
The functional properties of skeletal muscles and neurons are plastic and are remodeled with experience. Genetic and epigenetic mechanisms remodel the slow- and fast-twitch properties of muscles in response to exercise, aging and disease, and the maturation of interneuronal synapses. Changes in the phenotypic properties of muscles and neurons require the coupling of synaptic signals to selective changes in gene expression (known as activity-transcription coupling). The long-term goal of the Section on Molecular Neurobiology is to elucidate the molecular pathways that regulate activity-transcription coupling during development to modulate the plastic physiological properties of muscles and neurons.

In undertaking skeletal muscle studies, we identified cis- and trans-acting elements that confer the fiber-type–specific transcription of the troponin I slow (TnIs) and fast (TnIf) genes. We demonstrated that General Transcription Factor 3 (GTF3) contributes to the selective repression of TnIs in developing fast fibers. The genes encoding GTF3, and its related homolog GTF2i, are deleted in individuals with Williams-Beuren syndrome (WBS). In studies on central synapses, we focused on the transcriptional regulation of NMDA receptors (NRs) because of their role in activity-dependent synaptic plasticity. We have identified and isolated DNA regulatory sequences that confer the neuronal-specific and developmental up-regulation of NR2A during neuronal maturation. Expression of the NR2C gene, which also increases during cerebellar maturation, requires neural activity and the trophic factor Neuregulin (Nrg). We found that Nrg tyrosine kinase receptors (known as ErbB) interact with the same PDZ-domain proteins as NRs at postsynaptic densities of hippocampal neurons. The interactions of NMDA and ErbB receptors with PDZ-domain proteins at postsynaptic densities provide a mechanism to couple synaptic activity to signaling cascades that regulate transcription.

SKELETAL MUSCLE: DEVELOPMENTAL HISTORY AND NEURAL ACTIVITY CONTRIBUTE TO THE FIBER-TYPE SPECIFICITY OF TROPONIN I GENES
Identification of TnI Regulatory Elements that Confer Fiber-Type Specificity in Transgenic Mice
Calvo, Buonanno
Multiple DNA motifs in the TnI slow up-stream regulatory enhancer (SURE) are important for the activity of this enhancer. We have generated mutations of the TnI SURE to identify the cis-elements that confer the fiber-type specificity of the TnIs gene. As shown in Figure 17 (left), transgenic mice harboring the 95 bp TnIs basal promoter driven by the 128 bp SURE (extends from –868 to –741 from the transcription start site) express the luciferase reporter gene specifically in the slow-twitch soleus muscle. Transcription in the fast-twitch extensor digitorium longus (EDL), gastrocnemius (Gas), and tibialis anterior (Tib) muscles is extremely low (approximately 10- to 50-fold lower than in soleus). The systematic addition of sequences up to position –827, which contain the E-box, MEF-2, and CACC motifs, confers general muscle-specific transcription but fails to restore fiber-type specificity (Figure 17, middle). Specificity is regained only after a 15-bp region, residing between –842 and –827, is added to the pan muscle enhancer (Figure 17, right). Moreover, SURE is converted into a fast-specific enhancer if the 5'-half of SURE is replaced by the corresponding region of fast intronic regulatory element (FIRE). The results indicate that the TnISURE and FIRE have a modular organization: DNA elements directing fiber-type specificity reside in the 5'-halves and those conferring general muscle specificity are in the 3'-halves. The 5'-half of SURE harbors the CAGG and bicoid-like motifs (BLM), which we previously demonstrated to be necessary for enhancer function. Thus, constructs containing the 15-bp region between –842 and –827 were used on yeast one-hybrid to screen for trans-acting factors regulating slow muscle transcription.

Figure 17

Figure 17

TnI sequences that confer general skeletal muscle and fiber-type specificity of the SURE enhancer. Examples of transgenic mice harboring wild-type SURE(left), and truncations SURE-827(middle) and SURE-842 (right) of the enhancer.

Nuclear Factor GTF3 Interacts with TnI SURE Regulatory Elements

Venepally, Vullhorst, Karavanova, Buonanno
A yeast one-hybrid screen of 2.7 x 107 transformants yielded 10 partial cDNA sequences encoding GTF3, a transcription factor structurally related to TFII-I. Expression vectors for GTF3 encoding either its N- or C-terminal halves were translated in vitro and used on competitive electrophoretic mobility shift assays (EMSAs) to assess the DNA binding activity of both regions of the protein. We found that the C-terminal half of GTF3 specifically binds the BLM in SURE, which conforms to the consensus site for the initiator element (Inr: YYANTYY) that binds TFII-I. Recent reports indicate that GTF3 and TFII-I function as heterodimers.

Northern blots indicate that GTF3 is encoded by a 3.9 kb transcript expressed in many tissues. In situ hybridization shows prominent GTF3 hybridization in forming muscle masses at E15 as well as in skin and bones, which dramatically decreases with maturation. Regenerating adult muscles reactivate GTF3 expression (arrowheads), whereas nondegenerated areas are essentially devoid of GTF3 hybridization signals (arrows).

GTF3 Represses Transcription of the TnI SURE: Possible Implications for Williams-Beuren Syndrome

Vullhorst, Buonanno
We examined the functional role of GTF3 in TnIs transcription by transfecting expression and reporter vectors in adult muscles using in vivo electroporation. GTF3 significantly represses transcription from the TnI SURE. Based on the importance of sequences containing the BLM for fiber-type specificity of the TnI SURE, the early expression of GTF3 in skeletal muscle, and the inhibition of SURE activity by GTF3, we propose that GTF3 contributes to myofiber diversification during early development. The haploinsufficiency of GTF3 and GTF2i may underlie some of the characteristics of persons with WBS who have distinctive physical, cognitive, and behavior abnormalities that may include impaired spatial cognitive skills and myopathies. Alterations in the expression of proteins that regulate the contractile or metabolic properties of skeletal muscles could account either directly or indirectly for the myopathies associated with WBS. We have found that GTF2-I and GTF3 are expressed at high levels in developing musculature and neurons, raising the possibility that an early reduction of these factors could result in the down-regulation or misexpression of target genes later in development.

NEURONAL STUDIES: REGULATION OF NMDA RECEPTORS AND NEUREGULINS DURING DEVELOPMENT

Neuronal Expression of ErbB Receptors and Interactions with PDZ-Domain Proteins
Garcia, Karavanova, Vasudevan, Buonanno in collaboration with S. Carroll, University of Alabama at Birmingham
We analyzed the expression of ErbB receptors throughout the adult brain, using in situ hybridization and immunohistochemistry. In agreement with our earlier work, we found that ErbB-2 is widely expressed by most cell types; ErbB-3 is highest in the myelinated tracks and thalamic nuclei, and ErbB-4 is mostly confined to neurons in the cortex, hippocampus, thalamus, and basal ganglia. Using biochemical techniques, we studied the subcellular distribution of ErbB receptors. We found that ErbB receptors are present in brain fractions enriched for postsynaptic densities (PSD). We used a yeast two-hybrid system to identify proteins that interact with these receptors and that may regulate their subcellular distribution. The C-terminal region of ErbB-4 interacts with three closely related PDZ-domain proteins: PSD-95, CHAPSYN-110, and SAP 102. Using coimmunoprecipitation assays, we confirmed direct interactions between ErbB-4 and PSD-95 in neurons. Immunocytochemical studies confirmed that ErbB-4 colocalizes with NRs and PSD-95 at synaptic puncta of hippocampal neurons apposed to synaptophysin-positive presynaptic terminals. These observations have important implications for the possibility of cross-talk of ErbB and NMDA receptors at synapses and for the role of Nrgs in regulating activity-dependent plasticity at central synapses.

Characterization of NR2A Transcription Regulatory Sequences

Turetsky, Desai, Buonanno
The levels of NMDA receptors harboring the NR2A subunit increase sharply after two weeks of age, a time that coincides with the functional maturation of synapses. We identified the transcription initiation site of NR2A and cloned gene sequences harboring the basal promoter. A fragment extending approximately 9 kb upstream of the promoter was shown to confer neuronal specificity in transgenic mice and transfected primary cortical neurons; transcription in glia was minimal. Given that expression of the NR2A gene increases with maturation, we also analyzed transcription of the 9kb luciferase reporter construct in developing cultured cortical neurons. We found that the reporter is transcribed at low levels during the first week in culture and increases dramatically during the second week. The results indicate that the NR2A up-stream 9 kb fragment harbors sequences that confer both developmental and tissue-specific expression of the gene; experiments are in progress to delineate the regulatory motifs in the NR2A gene (Figure 18).

Figure 18

Figure 18

The upstream 9kb of NR2A gene sequence confer neuronal- and developmental-specific transcription. A. the NR2A-9kb lucierase construct is more selectively transcribed in transfected cortical neurons than in glia. Background levels of transcription are observed with the pGL3-Basic negative control. B. Transcription from the NR2A reporter construct increases during the maturation of cortical neurons in culture.

 

 

PUBLICATIONS

  1. Buonanno A, Fischbach G. Neuregulin and ErbB receptor signalling in the nervous system. Curr Opin Neurobiol 2001;11:287-296.
  2. Calvo S, Vullhorst D, Venapally P, Karavanova I, Cheng J, Buonanno A. Molecular dissection of DNA sequences and factors involved in slow muscle-specific transcription. Mol Cell Biol 2001;21:8490-8503.
  3. Garcia R, Vasudevan K, Buonanno A. The neuregulin receptor ErbB-4 interacts with the PDZ domain protein at neuronal synapses. Proc Natl Acad Sci USA 2000;97:3596-3601.
  4. Gerecke KM, Wyss JM, Karavanova I, Buonanno A, Carroll SL. ErbB transmembrane tyrosine kinase receptors are differentially expressed in adult rodent central nervous system. J Comp Neurol 2000;433:86-100.
  5. Ozaki M, Tohyama K, Kishida H, Buonanno A, Yano R, Hashikawa T. Roles of neuregulin in synaptogenesis between mossy fibers and cerebellar granule cells. J Neurosci Res 2000;59:612-623.
  6. Villegas R, Villegas G, Hernandez M, Longart M, Maqueira B, Buonanno A, Garcia R, Castillo C. Neuregulin found in cultured sciatic nerve conditioned medium causes neuronal differentiation of PC12 cells. Brain Res 2000;852:305-318.
  7. Weis J, Kaussen M, Calvo S, Buonanno A. Expression of MRF4 protein in innervated and denervated skeletal muscle. Dev Dyn 2000;218:438-451.